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Bioinformatics Vol. 16 no. 2 2000
Pages 180-181
© 2000 Oxford University Press

SISEQ: manipulation of multiple sequence and large database files for common platforms

Naoki Sato 1

1 Department of Biochemistry and Molecular Biology, Faculty of Science, Saitama University, 255 Shimo-Ohkubo, Urawa, Saitama Prefecture, 338-8570 Japan

Summary: A multiple sequence file converter for common platforms, SISEQ, is described, which performs extraction of DNA sequences that correspond to CDS or RNA field of a large database file as well as subsequent multi-sequence conversions for phylogenetic or molecular biological analysis. Command-line interface as well as a GUI and a script-driven operation mode are provided.

Availability: The program is freely available to academic users in the form of Macintosh FAT binary, DOS executable, or UNIX source code at http://www.molbiol.saitama-u.ac.jp/~naoki/Software.html.

Contact: naokisat{at}molbiol.saitama-u.ac.jp

Received on June 28, 1999 ; revised on September 9, 1999 ; accepted on September 10, 1999

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