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Bioinformatics Vol. 17 no. 2 2001
Pages 200-201
© 2001 Oxford University Press

Applications Note

3Dee: a database of protein structural domains

Asim S. Siddiqui 1, Uwe Dengler 2 and Geoffrey J. Barton 1,2,*

1 University of Oxford, Laboratory of Molecular Biophysics, The Rex Richards Building, South Parks Road, Oxford OX1 3QU, UK
2 EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

Received on May 23, 2000 ; revised on October 3, 2000 ; accepted on October 10, 2000

Summary: The 3Dee database is a repository of protein structural domains. It stores alternative domain definitions for the same protein, organises domains into sequence and structural hierarchies, contains non-redundant set(s) of sequences and structures, multiple structure alignments for families of domains, and allows previous versions of the database to be regenerated.

Availability: 3Dee is accessible on the World Wide Web at the URL http://barton.ebi.ac.uk/servers/3Dee.html

Contact: geoff{at}ebi.ac.uk; http://barton.ebi.ac.uk

* To whom correspondence should be addressed. Present address: EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.


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