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Bioinformatics Advance Access originally published online on February 5, 2004
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Bioinformatics 20(4) © Oxford University Press 2004; all rights reserved.

Applications Note

FORTE: a profile–profile comparison tool for protein fold recognition

Kentaro Tomii * and Yutaka Akiyama

Computational Biology Research Center, The National Institute of Advanced Industrial Science and Technology, Aomi Frontier Building 2-43 Aomi, 17F, Koto-ku, Tokyo 135-0064, Japan

Received on June 22, 2003 ; revised on September 10, 2003 ; accepted on September 24, 2003

Summary: We present FORTE, a profile–profile comparison tool for protein fold recognition. Users can submit a protein sequence to explore the possibilities of structural similarity existing in known structures. Results are reported via email in the form of pairwise alignments.

Availability: The server is available at http://www.cbrc.jp/forte/

Contact: tomii{at}cbrc.jp

* To whom correspondence should be addressed.


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