Skip Navigation


Bioinformatics Advance Access originally published online on August 12, 2004
Bioinformatics 2005 21(3):396-398; doi:10.1093/bioinformatics/bth474
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/3/396    most recent
bth474v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (9)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Curk, T.
Right arrow Articles by Zupan, B.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Curk, T.
Right arrow Articles by Zupan, B.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics vol. 21 issue 3 © Oxford University Press 2005; all rights reserved.

Microarray data mining with visual programming

Tomaz Curk 1, Janez Demsar 1, Qikai Xu 3,4, Gregor Leban 1, Uros Petrovic 2, Ivan Bratko 1,2, Gad Shaulsky 3,4 and Blaz Zupan 1,3,*

1 Faculty of Computer and Information Science, University of Ljubljana Ljubljana, Slovenia
2 Jozef Stefan Institute Ljubljana, Slovenia
3 Department of Molecular and Human Genetics, Baylor College of Medicine Houston, TX 77030, USA
4 Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine Houston, TX 77030, USA

*To whom correspondence should be addressed.

Summary: Visual programming offers an intuitive means of combining known analysis and visualization methods into powerful applications. The system presented here enables users who are not programmers to manage microarray and genomic data flow and to customize their analyses by combining common data analysis tools to fit their needs.

Availability: http://www.ailab.si/supp/bi-visprog

Contact: blaz.zupan{at}fri.uni-lj.si

Supplementary information: http://www.ailab.si/supp/bi-visprog


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Physiol. GenomicsHome page
W. Rodenburg, A. G. Heidema, J. M. A. Boer, I. M. J. Bovee-Oudenhoven, E. J. M. Feskens, E. C. M. Mariman, and J. Keijer
A framework to identify physiological responses in microarray-based gene expression studies: selection and interpretation of biologically relevant genes
Physiol Genomics, March 10, 2008; 33(1): 78 - 90.
[Abstract] [Full Text] [PDF]

Home page
 Physiol. GenomicsHome page
K. F. Tacer, D. Kuzman, M. Seliskar, D. Pompon, and D. Rozman
TNF-{alpha} interferes with lipid homeostasis and activates acute and proatherogenic processes
Physiol Genomics, October 19, 2007; 31(2): 216 - 227.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. Mramor, G. Leban, J. Demsar, and B. Zupan
Visualization-based cancer microarray data classification analysis
Bioinformatics, August 15, 2007; 23(16): 2147 - 2154.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
M. Maziarz, C. Chung, D. J. Drucker, and A. Emili
Integrating Global Proteomic and Genomic Expression Profiles Generated from Islet {alpha} Cells: Opportunities and Challenges to Deriving Reliable Biological Inferences
Mol. Cell. Proteomics, April 1, 2005; 4(4): 458 - 474.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.