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Bioinformatics Vol. 16 no. 8 2000
Pages 743-744
© 2000 Oxford University Press

Applications Note

gff2ps: visualizing genomic annotations

Josep F. Abril 1, and Roderic Guigó 1

1 Grup de Recerca en Informàtica Mèdica, Institut Municipal d’InvestigacióMèdica (IMIM), Universitat Pompeu Fabra (UPF), C/ Dr. Aiguader, 80. 08003—Barcelona, Spain

Received on December 15, 1999 ; revised on February 18, 2000 ; accepted on February 24, 2000

Summary: gff2psis a program for visualizing annotations of genomic sequences. The program takes the annotated features on a genomic sequence in GFF format as input, and produces a visual output in PostScript. While it can be used in a very simple way, it also allows for a great degree of customization through a number of options and/or customization files.

Availability: gff2psis freely available at http://www1.imim.es/~jabril/GFFTOOLS/GFF2PS.html

Contact: jabril{at}imim.es

Supplementary information: http://www1.imim.es/~jabril/GFFTOOLS/GFF2PS.html

To whom correspondence should be addressed.


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