Bioinformatics

Andy Brass

Bioinformatics Education—A UK perspective
Bioinformatics 2000 16: 77-78; doi:10.1093/bioinformatics/16.2.77 [Print PDF][Screen PDF] [Request Permissions]  

Marcella A. McClure

The complexities of genome analysis, the Retroid agent perspective
Bioinformatics 2000 16: 79-95; doi:10.1093/bioinformatics/16.2.79 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sorinel Adrian Oprisan, Aurel Ardelean, and Petre T. Frangopol

Self-organization and competition in the immune response to cancer invasion: a phase-orientated computational model of oncogenesis
Bioinformatics 2000 16: 96-100; doi:10.1093/bioinformatics/16.2.96 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

G. H. Gonnet, M. T. Hallett, C. Korostensky, and L. Bernardin

Darwin v. 2.0: an interpreted computer language for the biosciences
Bioinformatics 2000 16: 101-103; doi:10.1093/bioinformatics/16.2.101 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jong Park, Liisa Holm, and Cyrus Chothia

Sequence search algorithm assessment and testing toolkit (SAT)
Bioinformatics 2000 16: 104-110; doi:10.1093/bioinformatics/16.2.104 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

James A. Cuff, Ewan Birney, Michele E. Clamp, and Geoffrey J. Barton

ProtEST: protein multiple sequence alignments from expressed sequence tags
Bioinformatics 2000 16: 111-116; doi:10.1093/bioinformatics/16.2.111 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sarah A. Teichmann, Cyrus Chothia, George M. Church, and Jong Park

Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL
Bioinformatics 2000 16: 117-124; doi:10.1093/bioinformatics/16.2.117 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Robert M. MacCallum, Lawrence A. Kelley, and Michael J. E. Sternberg

SAWTED: Structure Assignment With Text Description—Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons
Bioinformatics 2000 16: 125-129; doi:10.1093/bioinformatics/16.2.125 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gráinne McGuire and Frank Wright

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments
Bioinformatics 2000 16: 130-134; doi:10.1093/bioinformatics/16.2.130 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eric Beitz

TeXshade: shading and labeling of multiple sequence alignments using LaTeX2e
Bioinformatics 2000 16: 135-139; doi:10.1093/bioinformatics/16.2.135 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. W. Purdom, Jr, P. G. Bradford, K. Tamura, and S. Kumar

Single column discrepancy and dynamic max-mini optimizations for quickly finding the most parsimonious evolutionary trees
Bioinformatics 2000 16: 140-151; doi:10.1093/bioinformatics/16.2.140 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Deyou Cai, Arthur Delcher, Ben Kao, and Simon Kasif

Modeling splice sites with Bayes networks
Bioinformatics 2000 16: 152-158; doi:10.1093/bioinformatics/16.2.152 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

John D. Westbrook and Philip E. Bourne

STAR/mmCIF: An ontology for macromolecular structure
Bioinformatics 2000 16: 159-168; doi:10.1093/bioinformatics/16.2.159 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mikio Yoshida, Ken-ichiro Fukuda, and Toshihisa Takagi

PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary
Bioinformatics 2000 16: 169-175; doi:10.1093/bioinformatics/16.2.169 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

John Bouck, Michael P. McLeod, Kim Worley, and Richard A. Gibbs

The Human Transcript Database: a catalogue of full length cDNA inserts
Bioinformatics 2000 16: 176-177; doi:10.1093/bioinformatics/16.2.176 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Thomas Junier and Marco Pagni

Dotlet: diagonal plots in a Web browser
Bioinformatics 2000 16: 178-179; doi:10.1093/bioinformatics/16.2.178 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Naoki Sato

SISEQ: manipulation of multiple sequence and large database files for common platforms
Bioinformatics 2000 16: 180-181; doi:10.1093/bioinformatics/16.2.180 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

G. R. Abecasis and W. O. C. Cookson

GOLD—Graphical Overview of Linkage Disequilibrium
Bioinformatics 2000 16: 182-183; doi:10.1093/bioinformatics/16.2.182 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Robert Stevens, Patricia Baker, Sean Bechhofer, Gary Ng, Alex Jacoby, Norman W. Paton, Carole A. Goble, and Andy Brass

TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources
Bioinformatics 2000 16: 184-186; doi:10.1093/bioinformatics/16.2.184 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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