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Previous Next 		Contents: Volume 24, Number 12, 15 June 2008   [Index by Author] 
Down DISCOVERY NOTE
     SEQUENCE ANALYSIS
Down ORIGINAL PAPERS
     SEQUENCE ANALYSIS
     SYSTEMS BIOLOGY
     DATABASES AND ONTOLOGIES
Down APPLICATIONS NOTES
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATABASES AND ONTOLOGIES
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

DISCOVERY NOTE Back

SEQUENCE ANALYSIS Back

Jacob A. Tennessen
Positive selection drives a correlation between non-synonymous/synonymous divergence and functional divergence
Bioinformatics Advance Access published on April 28, 2008
Bioinformatics 2008 24: 1421-1425; doi:10.1093/bioinformatics/btn205 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

ORIGINAL PAPERS Back

SEQUENCE ANALYSIS Back

Rainer Malik, Erich A. Nigg, and Roman Körner
Comparative conservation analysis of the human mitotic phosphoproteome
Bioinformatics Advance Access published on April 20, 2008
Bioinformatics 2008 24: 1426-1432; doi:10.1093/bioinformatics/btn197 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Kaname Kojima, Masao Nagasaki, and Satoru Miyano
Fast grid layout algorithm for biological networks with sweep calculation
Bioinformatics Advance Access published on April 18, 2008
Bioinformatics 2008 24: 1433-1441; doi:10.1093/bioinformatics/btn196 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Yong Li, Pankaj Agarwal, and Dilip Rajagopalan
A global pathway crosstalk network
Bioinformatics Advance Access published on April 23, 2008
Bioinformatics 2008 24: 1442-1447; doi:10.1093/bioinformatics/btn200 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Michael Bada and Lawrence Hunter
Identification of OBO nonalignments and its implications for OBO enrichment
Bioinformatics Advance Access published on May 7, 2008
Bioinformatics 2008 24: 1448-1455; doi:10.1093/bioinformatics/btn194 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

APPLICATIONS NOTES Back

SEQUENCE ANALYSIS Back

Michael Y. Tolstorukov, Vidhu Choudhary, Wilma K. Olson, Victor B. Zhurkin, and Peter J. Park
nuScore: a web-interface for nucleosome positioning predictions
Bioinformatics Advance Access published on April 29, 2008
Bioinformatics 2008 24: 1456-1458; doi:10.1093/bioinformatics/btn212 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Michael J. Sweredoski and Pierre Baldi
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
Bioinformatics Advance Access published on April 28, 2008
Bioinformatics 2008 24: 1459-1460; doi:10.1093/bioinformatics/btn199 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENE EXPRESSION Back

Korbinian Strimmer
fdrtool: a versatile R package for estimating local and tail area-based false discovery rates
Bioinformatics Advance Access published on April 25, 2008
Bioinformatics 2008 24: 1461-1462; doi:10.1093/bioinformatics/btn209 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY Back

Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca Wade, and Ursula Kummer
SYCAMORE—a systems biology computational analysis and modeling research environment
Bioinformatics Advance Access published on May 7, 2008
Bioinformatics 2008 24: 1463-1464; doi:10.1093/bioinformatics/btn207 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, and David J. States
Cytoscape ESP: simple search of complex biological networks
Bioinformatics Advance Access published on April 28, 2008
Bioinformatics 2008 24: 1465-1466; doi:10.1093/bioinformatics/btn208 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Martin Klammer, Sanjit Roopra, and Erik L. L. Sonnhammer
jSquid: a Java applet for graphical on-line network exploration
Bioinformatics Advance Access published on April 29, 2008
Bioinformatics 2008 24: 1467-1468; doi:10.1093/bioinformatics/btn213 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Gábor E. Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, and István Simon
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins
Bioinformatics Advance Access published on April 23, 2008
Bioinformatics 2008 24: 1469-1470; doi:10.1093/bioinformatics/btn202 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, and Stavros J. Hamodrakas
gpDB: a database of GPCRs, G-proteins, effectors and their interactions
Bioinformatics Advance Access published on April 25, 2008
Bioinformatics 2008 24: 1471-1472; doi:10.1093/bioinformatics/btn206 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.